rs28322127 SNP Detail

Summary

• ID
  rs28322127
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:62540104 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAGGTTCC AGAGTCAGGA
  GAGGGCTGTC CCCTTTCTTG AGCCCAAGGT CAGAGAGGAT CGCTGGGGGG AGTATGCCCT
  CACTTTGGGC CTTGCTTACC TTCTCTGTAA AATGGGCTTG CTGAAGCCGT ATTCTTTGGG
  GTCTAGGACA GACTCTTGTC TTGGAGGACT GACTCTTTGG ACACTACTCT GTGTGCTCAG
  W
  GGCCTCCATT GCAGCCTGCT CCTCCCACAG ACCTGGGCAA TGCTCTCATT CCTTTCTAGC
  CCCTTTCCCG TCACTCCTTT GCTAGCCAAT GGGGTAGGAT TGTTCTCCGA GGTGGCACTC
  AGGAGGCGGT GAAGAGCCTC CTGGCCCTGG CCGGACCAGA GTGCCAGAGC GCCACATTTA
  TCTTCAGACC AAGGATCTGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss38056162	NES09391207	PERLEGEN	MM_PANEL2	f	SNP	T	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs28322127					SNP	T	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38056162	NES09391207	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:62540104 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rgs3	regulator of G-protein signaling 3			Intron
				Noncoding-Transcript-Variant
Rr593363	regulatory region 593363			within coordinates