rs28321975 SNP Detail

Summary

• ID
  rs28321975
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:62581455 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTAGGAAC ATAATCCAAC
  ATATGTATAT CTTAAAGTGG AGAATATAGT GTATAGTATG CTGAGTAAGT GGGGTTTTGG
  TCAAACCATA GGATCCTTGA ATGTAAAACC AAAAGCCCCC TTTGTCCTCC AGGGAGAGCA
  ACAGTTGAAC AAGCCGATTT GTAGAGAACA AGACCAGGAT AGGTGCTAGA ACTTAGGCAC
  R
  TAGTTGGTGG CTTGAAGGTC TGCAGAGGGG ATTCAATGGT CTTAGAGCAC AGAGCTCTTT
  TCACTCAGCA ATTGCAGGAC CATTAGAAAG CCCCCTAACC TGGGCCATAA TGGAGAGGGA
  GCAGCTTGCC CCGTTGGTAC TTGGGCTGAT GGTGCGGGGG TGGGGGAGGG GGATTATCTA
  GTCAGCAGGC ATGTCTACAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss38056010	NES09389888	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A		G	A	A		A
ss321142896	CHEV_4_62324252	CHEVERUD	SCREENING_POP	f	SNP							A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs28321975					SNP	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38056010	NES09389888	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:62581455 () rs orientation: forward

Symbol	Name	Function Class
Gm52741	predicted gene, 52741	1586 bp upstream
Rgs3	regulator of G-protein signaling 3	Intron
Rr398306	regulatory region 398306	1405 bp downstream
Rr593377	regulatory region 593377	1597 bp distal
Rr593378	regulatory region 593378	1096 bp distal
Rr593379	regulatory region 593379	within coordinates
Tssr37513	transcription start site region 37513	402 bp upstream
Tssr37514	transcription start site region 37514	465 bp upstream