rs28321974 SNP Detail

Summary

• ID
  rs28321974
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:62581528 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTTGGTCA AACCATAGGA
  TCCTTGAATG TAAAACCAAA AGCCCCCTTT GTCCTCCAGG GAGAGCAACA GTTGAACAAG
  CCGATTTGTA GAGAACAAGA CCAGGATAGG TGCTAGAACT TAGGCACATA GTTGGTGGCT
  TGAAGGTCTG CAGAGGGGAT TCAATGGTCT TAGAGCACAG AGCTCTTTTC ACTCAGCAAT
  Y
  GCAGGACCAT TAGAAAGCCC CCTAACCTGG GCCATAATGG AGAGGGAGCA GCTTGCCCCG
  TTGGTACTTG GGCTGATGGT GCGGGGGTGG GGGAGGGGGA TTATCTAGTC AGCAGGCATG
  TCTACACATT CCGGGCACGT TCTGGCTGGA AGGGAATGAA TGAGCTGCAG TGTTTTACCT
  GGAGCCTGGC CGCATGCAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	C3H/HeJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss38056009	NES09389889	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T		C	T	T		T
ss321142897	CHEV_4_62324325	CHEVERUD	SCREENING_POP	f	SNP					T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	C3H/HeJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs28321974					SNP	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38056009	NES09389889	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:62581528 () rs orientation: forward

Symbol	Name	Function Class
Gm52741	predicted gene, 52741	1659 bp upstream
Rgs3	regulator of G-protein signaling 3	Intron
Rr398306	regulatory region 398306	1478 bp downstream
Rr593377	regulatory region 593377	1670 bp distal
Rr593378	regulatory region 593378	1169 bp distal
Rr593379	regulatory region 593379	within coordinates
Tssr37513	transcription start site region 37513	329 bp upstream
Tssr37514	transcription start site region 37514	392 bp upstream