rs28319420 SNP Detail

Summary

• ID
  rs28319420
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:106935158 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTATATGA ACCAAAGAAG
  GTCAGTGCCA GCACCTTCAG TCCTGGGGAC CTTCCCCAGG TCACTGTGCT GTTCTTCCAA
  CACTTAAGTC CAACCCCCAG AGTGTGTGAG GCTTAGACAA GGCGGGAGAT AGACCGGCCC
  TAATAAACAC TCCAAAACTG CTGATGGCTG CCCGTGCCTC AGTTCAGGCT TGAGGACTTA
  S
  AGTTCAGGAT CCTGATGCCC TCTGTCTCTT AGATGCCGCT CCAATTGCAC CTTCTCCTCA
  GGAAGCTACG TGCAGCCCAC ACTCACTGCT AGACTGGAAG GCTCTTGCCT TGTCCCCACA
  GCATGCTTTC CCAGAAAGAG CTGGTCGTTT CTCATCAGCT GCCTCACGCC TGGGAAGAAG
  TCCCGTCGTA TGTATTGAGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38286841	NES09610635	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28319420					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38286841	NES09610635	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:106935158 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cyb5rl	cytochrome b5 reductase-like			Intron
				Noncoding-Transcript-Variant
Rr596918	regulatory region 596918			955 bp proximal