rs28318685 SNP Detail

Summary

• ID
  rs28318685
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:101260416 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCTGCTGC TTTGGAGTTT
  CTGAGTCTCT TGGGGGTCCA GATGAAATAA AAAAATCAAA GAACTGACGT TTCCTCTGGA
  GACAATCGCA GGTGAATTTC TGTTCTTCGG CCTTCTGTCA GATGTCTCCT ATCTGTGACA
  CTTCAGTCAG ATGTCTATTG CTTTCTGCAA CATTGGTGGG TTTCCTTCTT CAATCACAAT
  Y
  TGTTGTTCTT CTAACCGTGT TGAGTGCCAA ATGTAAATGT AACTTTTGTT TTTCTGTGCA
  AACAAAGAAC AGCCTCCTTG AATGATCAAA AGGAGAACCT TCTGGCTGGT CTGCCTCTGG
  GAGCCGATGG TGTTCGTTCT GTGACTCTGC TCTGGAATAA AACAGGGAGT GAGGCTTTTG
  ATCTTTGCCT TCTAGTCTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38312713	NES09539178	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28318685					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38312713	NES09539178	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101260416 () rs orientation: forward

Symbol	Name	Function Class
Gm12798	predicted gene 12798	within coordinates
Rr596143	regulatory region 596143	1628 bp proximal