rs28318681 SNP Detail

Summary

• ID
  rs28318681
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:101260811 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTCCGGGT GTGGTGGCAA
  GTAGAGGGGT TGTTGCTTTG AAATCTGAAA TAATATCAGG AGGGTGAAAT TTTGAGGTAA
  GTTTTTCTGA GAGGATCCAC ACAGAAGGGT AAAGAGAGAT GGCTAATTCC CAGGATGAAA
  AACAAAACCC GACGCTCAGA ACACTTTCAC TGCACTCGGG AATCATCCTC AGGAGCGACA
  R
  TTATGATCGT TTGTTGAGAA AGTCACTTGG CAAGTCAGAG TTTGGTAAAG ATGATGGCAG
  TTATCTATAC CTGCCAATAG GAGAGCTCTT TGCAGGAAGA CCAGAAGCTC TTGGTTGCCC
  TGGTGGTGGT AACAGTGTGA AAAGACCACC CACCATCTGG TTATTTTATT AGATCACCGG
  AGGAGAGTGA ACCCCTTTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38312709	NES09539185	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A		G	A	A	G		A
ss321229918	CHEV_4_101076219	CHEVERUD	SCREENING_POP	f	SNP										A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28318681					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38312709	NES09539185	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101260811 () rs orientation: forward

Symbol	Name	Function Class
Gm12798	predicted gene 12798	within coordinates
Rr596143	regulatory region 596143	1233 bp proximal