rs28307988 SNP Detail

Summary

• ID
  rs28307988
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:107049651 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATAAA TGACATAATG CTTTCATCAC
  Y
  GTTTTAGTCT AAGCCAGAAA TTCAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	WSB/EiJ
ss38286508	NES09500876	PERLEGEN	MM_PANEL2	f	SNP		T	C			T	C
ss45637071	mCV24827252	ABI	CRAMUS_MOUSE	f	SNP	T	T		C	T
ss147175942	ENSMUSSNP3977563	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T			T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	WSB/EiJ
rs28307988					SNP	T	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38286508	NES09500876	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107049651 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr596946	regulatory region 596946			1761 bp proximal
Tmem59	transmembrane protein 59			Intron
				Noncoding-Transcript-Variant
				Splice-Site