rs28307018 SNP Detail

Summary

• ID
  rs28307018
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:101349626 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGGTTTGCG TATGTCATAT TTGGATTCTT CAAGCACATT
  TATTTGTTAA TTTGTCGTAT GTGTGATGTG TATGTGATGT GTGTGTGGTG TGATGTGTAT
  S
  ATACGTGTAT GTGTGTGTAT GTGTGGTGTA TGGGTAGGGA GGTGCAGGCC AGAGGACCAT
  GAAGGAGTCA GTTCTCTCTA TTATGTGAGT CCTGACACAG                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	WSB/EiJ
ss38312441	NES09534178	PERLEGEN	MM_PANEL2	f	SNP	C	G	C	C	C	G	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	WSB/EiJ
rs28307018					SNP	C	G	C	C	C	G	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38312441	NES09534178	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101349626 () rs orientation: forward

Symbol	Name	Function Class
D4Mit176	DNA segment, Chr 4, Massachusetts Institute of Technology 176	289 bp distal
D4Mit176.3	DNA segment, Chr 4, Massachusetts Institute of Technology 176.3	120 bp distal
Rr596165	regulatory region 596165	1338 bp proximal