rs28306171 SNP Detail

Summary

• ID
  rs28306171
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:98857176 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCTTCACA ATTACACGCC
  AATTCTCCTA ACACTCAGCC ATCTCTCTAG TTCCAAGAAA TACTGGCGGT TTTATGTTTT
  GAAATTTTCA ATCAGGATAG CAGCAAGTAA AATCTAAGAA GAATAACCTT AAGGAAGTGA
  ACAGAACAGA CTACAGAGAG AATACCGAAT GCTATGAAGT AGGCAGCCAT TACGACAGCA
  K
  TGAGTTAAGA CCCTGAGAGA GTGACAGCAG CAGATAGGGA CTGCCAGAAA CAGGTGAGAG
  ACTAGTTACT AAAACAACTG GAGCATCCTG GGAACGGATT CACACTCTGG TTCTCCTACT
  TTCTTCCTGT GTTCATGGGA CACTCTGAAA CATCTCTGTG GCTAACTACT GTTATCTACA
  AAAGCAGGAT AGTGGTCATT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38241494	NES09548643	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28306171					SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38241494	NES09548643	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:98857176 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dock7	dedicator of cytokinesis 7			Intron
				Noncoding-Transcript-Variant
Rr595812	regulatory region 595812			1126 bp proximal
Rr595813	regulatory region 595813			1206 bp proximal