rs28304034 SNP Detail

Summary

• ID
  rs28304034
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:104556568 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGACAGGGT CTCTCTATAT
  AGCCCTGGCT GTCCTGGAAC CCAGAGATCT GCCTCTGCCT CTCTAGTGCT GGCATTAAAG
  GTGTGTATCA CCATACCTGG GTTTTATGCT ATCAGTTGGC ATTCAACTAT TCATATGAAC
  AATGTGTTGA AAACACAGAG CTAGGAAGGA GAAAGTTGTA CTTCTTAAAC ACTTCCACCT
  Y
  AGTAAGTAGA CTGGCACACT ACCTACTGAG GCAAAAAAAT TAAACATTCA ATCAACTGGA
  ATCATAGAAG TTATTAGCCT TTAATAACGT TACTTAGGAG AAGAATAGAC CAAATTATGG
  CTCTTCCTTG AGCTAAAAAT GTCTGCTCTG GATACTGTAA GACTTCAAAT CTTAAGATTT
  ATATTCAAGC TAGGCAGGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37619385	NES09073045	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28304034					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37619385	NES09073045	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:104556568 () rs orientation: forward

Symbol	Name	Function Class
Depdc7	DEP domain containing 7	Intron
Rr562115	regulatory region 562115	1579 bp proximal