rs28304031 SNP Detail

Summary

• ID
  rs28304031
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:104557791 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAATGGAAG GTCGACAAGT
  TGTAGCAGCC GTCCAATCGT CTCCTCTTGC CATACTTCAT TGATAACTAC ACAGGAGAAC
  GACAGAGTGG GAGGTATCAA TTAATAGTTA TTCCATGCTC ACTGCAACAT CTGTCTAGGT
  AGGTCTAACT ATTAAATCTG TGGCAGAAAG TGGGTATAGT AGGCCACTCT TACTCATGGA
  R
  TGCTTTCTTA CAACAAGACA ATCCAAGATT TGTTTAAAGT GTAGGAGAAC AGCCTCTGGA
  CAAGAGGAAT TCTTGTCATT CTTTGTTCCA TATAAAGCAA TATGCCAGAG ATAAGGGATC
  AAGCCGTATA ACATGCTAAT GAGGACTCTA GAAGAAAGAA TGGTTCATTC AATCTCAAAA
  CTCATTTGAA ACTATTGGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37619382	NES09072980	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	A	G		G	G	G	A		G	A	G	G		G
ss45325427	mCV24363730	ABI	CRAMUS_MOUSE	f	SNP		A	G					G		G
ss147153629	ENSMUSSNP2558391	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G							G
ss320445566	CHEV_2_104567603	CHEVERUD	SCREENING_POP	f	SNP													A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28304031					SNP	A	A	G	G	G	A	G	G	G	G	G	A	A	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37619382	NES09072980	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:104557791 () rs orientation: forward

Symbol	Name	Function Class
Depdc7	DEP domain containing 7	Intron
Rr562115	regulatory region 562115	356 bp proximal