rs28304030 SNP Detail

Summary

• ID
  rs28304030
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:104558402 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACATTTCAG ACTTGAAGCC
  CTGCCAGCAG ATGGACAAAA GTCAGTGTTC AAGAGTTGTA ACAGTGATGT GTTGTTGTTC
  AGGATAATAG ACTTCTGTTG AAGCTCAACA TAAACAGCCT TAACACACAG CACACTCTTT
  CTCTGCTTGA ACATGAAAAT TCAAATAAAA GCTGGGAGGA AATGTCTCCT GGGTCTTCCA
  Y
  TTCTCCCTGG GCATCACTAG CTTACCTTGA GGAGAGAGCC TGGTAGAGAT ATGTATGTGA
  GGGGAGCTGG CAGGCTTTAG ACTCAGGTTC TCCCACAGGT CCTCCAAACT GTCCGACTTG
  ATATCAGATG ACATAAACGA TGCATCTGAG TACCTAACAG TATGTCCACA GTAATGATGA
  GTGTTAGAGC TGCAGTGGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37619378	NES09072984	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28304030					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37619378	NES09072984	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:104558402 () rs orientation: forward

Symbol	Name	Function Class
Depdc7	DEP domain containing 7	Intron
Rr562115	regulatory region 562115	116 bp distal