rs28303126 SNP Detail

Summary

• ID
  rs28303126
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:41315010 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCGCCGTGT CTGGAAAGGA
  CGGCGAGCGG CGAGAACCAA AACACCCCCC TCCCACTCGC CCGCGCCCCG TCACTCCTGC
  GCAGCCGCAC ATAGCAGCAC GTCGCCACGG AGACACCGCC CAGACCAGCA GGGCGGGACT
  TAAGCGCAGC AAGGAGAATT GATGTCCTCG GAGAACTTCC GCTTGCCTCT TGCCAATGGC
  R
  GTTAAGCTGT GGCCAAAGGA ATCCAGCCTT CTGTCGGGAC ATTTCCGACC TCAGCCAGCT
  CATCCTCTGG CATGCGGAAG TAAGCATGAG CTGCCTGGCT GCGGGACCAA TCTTGAACCT
  GTAACCATCA TGGTAGGATT AAAGATATTC TAGACACCCT GATTGCCAGA TTGCAATCAG
  ACTATTAAAA CACTGGACTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37938060	NES09463748	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs28303126					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37938060	NES09463748	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:41315010 () rs orientation: forward

Symbol	Name	Function Class
Dcaf12	DDB1 and CUL4 associated factor 12	Intron
Gm46891	predicted gene, 46891	within coordinates
Gm57103	predicted gene, 57103	within coordinates
Gm69126	predicted gene, 69126	912 bp downstream
Rr398216	regulatory region 398216	within coordinates
Rr590620	regulatory region 590620	132 bp distal
Rr590621	regulatory region 590621	within coordinates
Rr590622	regulatory region 590622	87 bp proximal
Tssr1148	transcription start site region 1148	1720 bp downstream
Tssr36854	transcription start site region 36854	651 bp downstream
Tssr36855	transcription start site region 36855	96 bp downstream
Tssr36856	transcription start site region 36856	40 bp downstream
Tssr36857	transcription start site region 36857	1789 bp upstream
Tssr36858	transcription start site region 36858	1799 bp upstream
Tssr36859	transcription start site region 36859	1829 bp upstream
Tssr36860	transcription start site region 36860	1845 bp upstream
Tssr41324	transcription start site region 41324	1573 bp upstream
Tssr41325	transcription start site region 41325	1096 bp upstream
Tssr41326	transcription start site region 41326	287 bp upstream
Tssr41327	transcription start site region 41327	252 bp upstream
Tssr41328	transcription start site region 41328	223 bp upstream
Tssr41329	transcription start site region 41329	208 bp upstream
Tssr41330	transcription start site region 41330	151 bp upstream
Tssr41331	transcription start site region 41331	121 bp upstream
Tssr41332	transcription start site region 41332	1683 bp downstream
Tssr41333	transcription start site region 41333	1699 bp downstream
Tssr41334	transcription start site region 41334	1733 bp downstream