rs28298950 SNP Detail

Summary

• ID
  rs28298950
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:159430021 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCATTCTCT TGGTTTTGGT
  TTTGTTTTGT TGTTTTTCTG TGTCTCCTAT TTCCATTAGT GTTAAAGGAG GTGTTCGAGA
  GTTGCAGAGA ACACCTATAG GGAAATGTAG ATGTAAGAAA ATGGGAAAAC CAGAAAAGCA
  CATGCATTAG CAAGTCCCGA GTTACCAGAG TTCAGTTCTA CTGGGGACAC CTTGACACAG
  Y
  GTTACTTCAT ATGGTGGATG AAGGCTCCCA AGGGTGTCAT GTCCATCACT TCTGTCTACT
  TGGAAGAGTG CAGAACTCCC TTCGAAAGCT TTTTACAAAT GCTACAAAGC AAAGAAGAAC
  AGACATCAGT CTGTATTCTG AGCAAAAGGA AGGGAAACAA TCTAAGAAAT CCGAGGAGGC
  CTTGATATGA GCTATGGAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss37537385	NES08887160	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	T	T	T	T	C	T	C	T
ss148134218	ENSMUSSNP2154268	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs28298950					SNP	C	C	T	T	T	T	T	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37537385	NES08887160	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:159430021 () rs orientation: forward

Symbol	Name	Function Class
D2Mit411	DNA segment, Chr 2, Massachusetts Institute of Technology 411	1571 bp distal
Rr568924	regulatory region 568924	1330 bp distal
Rr568925	regulatory region 568925	1031 bp distal
Rr568926	regulatory region 568926	698 bp distal