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rs28295685 SNP Detail
Summary
  • ID
    rs28295685
  • Variation Type
    SNP
  • Alleles
    G/T
Genome Location and Flanking Sequence
  • Location
    Chr4:62739906 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CAAGAACCTG AGCGGAGCAG
    AGGAGGCAGG GCAGGGCATC CCATGCCCCA GGACTTTAAA GTAATCATCA GTTAAAAAGT
    TCCTCTTACT GGGGACCAAG GTTAGTAACG CTAAGGTCAG GTAACTCTCC TCCTTCCAGG
    TTTAGGTGGA AGAGGAAGTG ATAGGGCCAG GGTACAGGAG CCTTGGTTAC TCTTTCAAGT
    K
    CCAGCTTTGT GGGAACAAAA CACAAGACCT AAATTCTTGT CCAACAAGCC CTGATGAAGG
    GGAGTGTTTT GGCTACGTGG CAGCAGAGGG CGCCAACTCT GGAGAACTCC CTAGAGTGGT
    CCCCCCCCCC CCCCCCCCCC GATAAAGGGT GGCAGGGAAT TCCAAGGCTA GATCTATCTA
    GCTCTCAGCA CTTGCCTCTA                                            
    
    K = G/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
C3H/HeJ
CAST/EiJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss38055507 NES09413490 PERLEGEN MM_PANEL2 f SNP T T T T T G T
SNP Consensus Information
SNP Consensus Type
C3H/HeJ
CAST/EiJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs28295685 SNP T T T T T G T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss38055507 NES09413490 PERLEGEN MM_PANEL f SNP G/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr4:62739906 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Rr593424 regulatory region 593424 76 bp proximal
Rr593425 regulatory region 593425 1003 bp proximal
Rr593426 regulatory region 593426 1096 bp proximal
Rr593427 regulatory region 593427 1948 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory