rs28295681 SNP Detail

Summary

• ID
  rs28295681
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:62740559 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACAGGGTC TCACTAGGTA
  AGCAAAATGA CTTTCAACTT GTGATCCTCC TGCCTCAGCT TCCCAACTGC TTGGGCTCTA
  GGCATGCACC ATCATACTCA TCTTCTTACT AGGACAGTGT GTCCAAGAGC AGGAACTACA
  GATGCTGTTG GAGACTTCCA CAATGCTGCA GGACAGGATT CCATTCTTGG GTTTACAGTG
  M
  GAGACCCTCT GTGGTCTTTC TTTCTTTCTT TCTTCCTTCC TTCCTTCCTT CCTTCCTTCC
  TTCCTTCCTT CCTTCCTTTC TTTCTTTCTT TTTTTCTTTC TTTCTTTCTC TCTTTCTTTT
  TCCCCTTCTT TCTTTCCTTC TGCTTTTCTT TCCCTTCTTT CTTTTTCCTT TATTTCTTAC
  TTATTCTATT ATTATTATTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38055503	NES09413431	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28295681					SNP	C	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38055503	NES09413431	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:62740559 () rs orientation: forward

Symbol	Name	Function Class
Rr593424	regulatory region 593424	556 bp distal
Rr593425	regulatory region 593425	350 bp proximal
Rr593426	regulatory region 593426	443 bp proximal
Rr593427	regulatory region 593427	1295 bp proximal