rs28295680 SNP Detail

Summary

• ID
  rs28295680
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:62741329 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTTGCACC AAGACCCTGG
  TCAGTCTAAT TTCTACTGGG CTAAATCCAC ACTTTTAGAG CATTATTGTC GTCCTTCATT
  ATTTATTTAT TTTGATTTCT GGCACCAAGT CTACTTAGCC TTGCCTTGTG TGTGTGCCTC
  CTACACTCTT CATACTCTCT GTGATGACAT TTCCACCACT GCATAATTTG CTGTTGATAA
  R
  AGATAAGCCA GGTATCTCTT CCATTGGCTG GGCTGGTTTC CTGAATCCTC GTTTTATGTT
  TGGATCCATT ACTGCACCAT CTCCCACACC ATCAGCACGT GCCTTTAGCA CAAAGGACCT
  TGGAAGCATC TTCTGACTAT ACCGATAGGT ACATGTATAG GTGTGCACAT GGCACACACA
  TGGCACACAC ATGTGAGACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss38055502	NES09413404	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs28295680					SNP	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38055502	NES09413404	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:62741329 () rs orientation: forward

Symbol	Name	Function Class
Rr593424	regulatory region 593424	1326 bp distal
Rr593425	regulatory region 593425	185 bp distal
Rr593426	regulatory region 593426	306 bp distal
Rr593427	regulatory region 593427	525 bp proximal