rs28295678 SNP Detail

Summary

• ID
  rs28295678
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:62741866 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCCCGTCT CCCCTCCCAT
  CTCAGAGCAC TGGAATTATG GGTGTGTAAT GTCACCTGGC TTTTTGTACA GGTTTCTAGG
  ATCTGAACTC AGACCCATAC ATTTTCCAGG CAAATGTTTT ACCCACTGAA CCATCTCTTC
  ATCAACTTAC CCCTATTTTA AAGGTGTAGA ACCCAAGATC CCAGGAGAGG TCCCATTAGG
  W
  TGCTGGCACT GCGGAGACCC TAGCTAGCTT CAGTGTTTGC ACTACACATG GGGTTTTATT
  GCCCATGCCC CATCCCTGAG TGTGACTGCC TTCCAGCACC CCGCTGGTCT TTTGTTCTCT
  GTTCCCTCCT GTGGCAAGCT TCCAGCAGGG CTGATTCATG GATCTGGGAC CGCATGGCTC
  CCATTAACTT CGAGAAAAGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38055500	NES09413345	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28295678					SNP	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38055500	NES09413345	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:62741866 () rs orientation: forward

Symbol	Name	Function Class
Rr593424	regulatory region 593424	1863 bp distal
Rr593425	regulatory region 593425	722 bp distal
Rr593426	regulatory region 593426	843 bp distal
Rr593427	regulatory region 593427	within coordinates