rs28295676 SNP Detail

Summary

• ID
  rs28295676
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:62742358 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACTATAGG AAAGCTATTT
  AGATTTATGA AAATTGCTTA AGAGTTTATA TCAAGTCCCC AAATGGAGGC TGACTCTGTT
  CTCAGCCCAG ATGACATTGA ACAGCAGTGG TAAGAAGCAG GCTGTTACCA TTCAACAGCC
  TTGAGTTTGA AGTCAAAGGG TCTGTGGACA CCCCCACCCC CTTCATTTGC CTGCATAGCT
  Y
  GTGTGGGCGG GCAGTCCTTT TACCTCTGGG ATTAGTTTTT TTCATTTTAA AATTAAACAC
  GTATTTTCAA TTATGTATGG GGGGGGTCAC ATGTGTGAGT ACAGTTGTCC ACGGAATTCA
  GAAGAGGGCA TCAGATCCTC TGCAGCTAGA CTTATAGGTG ACTGTAAACC CCCAACATGG
  TTTTGGAGAA ATGAACTCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss38055498	NES09413347	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs28295676					SNP	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38055498	NES09413347	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:62742358 () rs orientation: forward

Symbol	Name	Function Class
Rr593425	regulatory region 593425	1214 bp distal
Rr593426	regulatory region 593426	1335 bp distal
Rr593427	regulatory region 593427	241 bp distal