About   Help   FAQ
rs28295675 SNP Detail
Summary
  • ID
    rs28295675
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr4:62742934 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TGCTACTAAA GGATGAGACA
    GAGCAACTAT GCCTTTGTGT CATTTTACCT TCTAAATGCT ACTTGAGTCT GACACATCAG
    GCACAGAGTA GGTCCTCTGC GAGGCTTTCT GAAGCCAAGT CTCTTTCAGA GACAGAGCCC
    AGTTTCAGCC CTGTGGGACC TAGTAGGCGC TCAATTAGTC AGAGTTGCAT GGCACAGTTC
    Y
    GTGGAAACGG CTCTGCTTTT ATTTAATGAC TTGCTTAGAT GCATTTTAAT ATGCAGACCA
    CAATGCCGGC GCACTGTCTT CTGGACGGCG AGGCGTAGGC ATTCATTATT TTATGAGCTG
    CATATGTCAT GCAGAGCACA AGCCCCTTTC TTAAACCAAC ACAACATGCA AATAGAAATT
    TCATGTAAAA TCACATTCAG                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss38055497 NES09413300 PERLEGEN MM_PANEL2 f SNP T T T T T T C T
SNP Consensus Information
SNP Consensus Type
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs28295675 SNP T T T T T T C T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss38055497 NES09413300 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr4:62742934 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Rr593425 regulatory region 593425 1790 bp distal
Rr593426 regulatory region 593426 1911 bp distal
Rr593427 regulatory region 593427 817 bp distal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
03/18/2025
MGI 6.24
The Jackson Laboratory