TGCTACTAAA GGATGAGACA GAGCAACTAT GCCTTTGTGT CATTTTACCT TCTAAATGCT ACTTGAGTCT GACACATCAG GCACAGAGTA GGTCCTCTGC GAGGCTTTCT GAAGCCAAGT CTCTTTCAGA GACAGAGCCC AGTTTCAGCC CTGTGGGACC TAGTAGGCGC TCAATTAGTC AGAGTTGCAT GGCACAGTTC Y GTGGAAACGG CTCTGCTTTT ATTTAATGAC TTGCTTAGAT GCATTTTAAT ATGCAGACCA CAATGCCGGC GCACTGTCTT CTGGACGGCG AGGCGTAGGC ATTCATTATT TTATGAGCTG CATATGTCAT GCAGAGCACA AGCCCCTTTC TTAAACCAAC ACAACATGCA AATAGAAATT TCATGTAAAA TCACATTCAG Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss38055497 | NES09413300 | PERLEGEN | MM_PANEL2 | f | SNP | T | T | T | T | T | T | C | T |
SNP Consensus Information | |||||||||||||
SNP | Consensus Type | BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
||||
rs28295675 | SNP | T | T | T | T | T | T | C | T |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss38055497 | NES09413300 | PERLEGEN | MM_PANEL | f | SNP | C/T |
Location: Chr4:62742934 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Rr593425 | regulatory region 593425 | 1790 bp distal | ||||||
Rr593426 | regulatory region 593426 | 1911 bp distal | ||||||
Rr593427 | regulatory region 593427 | 817 bp distal |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/18/2025 MGI 6.24 |
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