rs28292468 SNP Detail

Summary

• ID
  rs28292468
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:10196126 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTACCATC CCCATCTAAA
  GGTTAGTCCT GAACATAGAG GGAATCTCCC ACATCCTGCT CTTGTTCAGT GGCTGTACTA
  CTCTGTCAGT GTATGTACTA TCTCATCAAA ATATTGGGCA TATCACTTCT ACTCTTGTGA
  AACATTGTTG TGTGTGCACT GTCATGTGAT CACCATTTCA AATGACCACA ACCTGGAAAG
  R
  TTAAAAAGCT CAGAATCTTA GGATTTCTTT CTTTCATTCT TTCTCTTTAA AGGCCCAGCC
  GTTTGTGGAT ACTTATAAAT CGTTTTTGGT ATCTGCCTAG GGAAAAGAGT ATCTTGAGTT
  CAGTTGGGTC TTCTCATAAC CCATGTGATG ATTATCACAC AATGTGACTT TGAGGATAGG
  GCCTTTAGAG CAGTAACTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37853200	NES08640323	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28292468					SNP	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37853200	NES08640323	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:10196126 () rs orientation: forward

Symbol	Name	Function Class
Rr588773	regulatory region 588773	1211 bp proximal