rs28291501 SNP Detail

Summary

• ID
  rs28291501
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:140551552 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCCATACC AAGCTTCACA
  AATGAAAAGG TTATCCAGGG TTTGTGGTTG AGTGGTGCTC CTGTGGGCTA CTTGGGGGAG
  GGGAGGAACC CACTCGGTGT AGTAAGCAGG CATCTGTCTA CGTGTTAACT GAATCTTGAC
  CTCTGCTCCA TCACAGCTGG TCGGCATAGG GCCGCCGAGA TGCCCTGCCA CGAGGGTACC
  Y
  AGCTGGTTAC TCGCTCAGTT CCAGCTGCCT ATTCTGCCTC TGGACCCTTC CAAGACAGGA
  TAACAGCGAC TGGCTTCCCA TTCTGTCCCT GCTTATGTGG CAGAGGGCAT GTCACCTCCC
  AGCTTGGCTG ACTTTAGACA GGTTCTCATT AGTCCAGGCT GGCTTTTGAA TTCTCAATGT
  AGCTGAAAAT AACCATGAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37788132	NES09139802	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28291501					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37788132	NES09139802	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:140551552 () rs orientation: forward

Symbol	Name	Function Class
Padi1	peptidyl arginine deiminase, type I	Intron
Rr603559	regulatory region 603559	1908 bp distal
Rr603561	regulatory region 603561	1792 bp proximal