rs28291487 SNP Detail

Summary

• ID
  rs28291487
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:140553306 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCGGGACTC TCAATACACC
  AATCAGGAAA AGGAGGCCTT CAGAAGCCTC AACCTACACC GTGAGCCAAG AAGAAAGAAG
  ACCATGTCCT CAAAGGGAAC AGAGGCCGAG GGACTGCAGT GCCAAAAGCC GGGGCCCTCC
  GGACCCCGCA GACGCTCACT CTGCAGGAGA CTTGGGGCCC ACAAACCCAC AGAAACAAGG
  Y
  CACCTCGGGA GAAAGTGCGG CCGACTGTCA GGCAGGGGCC TGAAGTGCCC CACTGCCTTA
  CTGAGTTGGC AAGGTGCTTA ACCTCCCTAG CCTCCGTGTC CTTGGTCCTG AAAGCTCGAG
  GGCAGTGTGA GCTGTGGCAC CTGCTGCCAT CCCGGAACAG GAAGTAGCGC AGTTCCTGGC
  GCGGCATGCT CACTAGGGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37788118	NES09139672	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	T	C	C	C	C	C	C	C	C	C	C
ss147714778	ENSMUSSNP7062710	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28291487					SNP	T	C	C	C	T	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37788118	NES09139672	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:140553306 () rs orientation: forward

Symbol	Name	Function Class
Padi1	peptidyl arginine deiminase, type I	Intron
Rr603561	regulatory region 603561	38 bp proximal
Rr603562	regulatory region 603562	1428 bp proximal
Tssr44283	transcription start site region 44283	549 bp downstream