rs28291468 SNP Detail

Summary

• ID
  rs28291468
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:140554780 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGCATCTAG TTCAGTGGGC CTGTCTTTCA CCTCTACCTG
  TGATATCTCA AGGGCTGGCC AGCAGAGGCC ACCAGATACC AGGCCGTGGC AGAAGGCTCA
  Y
  GACAGCCAGA ATGGGTCAGA CTCGGTGTGG GCCCTGTGGC TGGGTCCCTA GATACTCAGA
  AAATGCAGTA GTGACCCAAG AAGGGTGAGG CCAGGTCCCT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37788099	NES09139693	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28291468					SNP	C	C	C	C	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37788099	NES09139693	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:140554780 () rs orientation: forward

Symbol	Name	Function Class
Padi1	peptidyl arginine deiminase, type I	Intron
Rr603561	regulatory region 603561	1056 bp distal
Rr603562	regulatory region 603562	25 bp distal
Tssr44283	transcription start site region 44283	879 bp upstream