rs28291467 SNP Detail

Summary

• ID
  rs28291467
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:140554803 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACGA CAGCCAGAAT GGGTCAGACT
  Y
  GGTGTGGGCC CTGTGGCTGG GTCCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss37788098	NES09139695	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C		T	T	T	C
ss147714883	ENSMUSSNP1972696	ENSEMBL	ENSEMBL_Sanger	f	SNP	C				C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs28291467					SNP	C	C	C	C	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37788098	NES09139695	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:140554803 () rs orientation: forward

Symbol	Name	Function Class
Padi1	peptidyl arginine deiminase, type I	Intron
Rr603561	regulatory region 603561	1079 bp distal
Rr603562	regulatory region 603562	48 bp distal
Tssr44283	transcription start site region 44283	902 bp upstream