rs28289704 SNP Detail

Summary

• ID
  rs28289704
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:171257900 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTTTGTAATA TAAATGTTTC TCATGGAACA TAGTTACCTT
  AAAGTACAAG TTAACCGAGA TTGGTTTTAA TCTTTTATTT TTTCACTGCT AAATTTGACC
  R
  AATGATCGGG GGATTTTTTG TTTCCTAGGG GTTAAACGTC TTCAAGATAG TCACTAGTGG
  CAGATTCTGT CACAACAGCG ATCCCACCCA GGGAAAGAT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37813131	NES08700598	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G		A	G	A		A	G	G	A		A
ss45279192	mCV22574363	ABI	CRAMUS_MOUSE	f	SNP	G	G	G				A
ss148301403	ENSMUSSNP3577684	ENSEMBL	ENSEMBL_Sanger	f	SNP			G
ss320616050	CHEV_2_171241480	CHEVERUD	SCREENING_POP	f	SNP											G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28289704					SNP	G	G	G	G	G	G	A	A	G	A	G	A	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37813131	NES08700598	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:171257900 () rs orientation: forward

Symbol	Name	Function Class
Rr571554	regulatory region 571554	553 bp proximal