rs28289699 SNP Detail

Summary

• ID
  rs28289699
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:171258630 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAAATAAATA AATAAATAAA TAAATAAATA AATAAATAAA
  ATGTGGTTAT GCTTGCTCCA AAAACCTCCT CACACTCAGC TTCCTTGGGC ATGAAGTAGA
  M
  GGATGCATGT GTAACAGCTG GCTGTCTCTG GGTTGCTTGT GACTATGACA GGAAAGGGAA
  GGGAAGGGAA GGCTGTGCTA ACAGAACTGA AATAACTTT                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37813126	NES08700573	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	C	A	C	A		C	A	A	C		C
ss148301411	ENSMUSSNP685049	ENSEMBL	ENSEMBL_Sanger	f	SNP		A					A
ss320616055	CHEV_2_171242210	CHEVERUD	SCREENING_POP	f	SNP										A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28289699					SNP	A	A	A	A	A	C	A	C	A	A	C	A	A	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37813126	NES08700573	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:171258630 () rs orientation: forward

Symbol	Name	Function Class
Rr571554	regulatory region 571554	156 bp distal