rs28287843 SNP Detail

Summary

• ID
  rs28287843
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:117668521 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATTGTACCT CACCCAAGGA AGAAACCCTC GGCATGATAA
  GGAAGTCGGA CCCAGCTGTC CCCAGTTCCC ATGACCCTGG GGCTCCATAG CAGGAGCTCA
  M
  AACATGACCC AGGCATTCTT TCCCTTAGAA TGATACGACC CTTGGCTGAT GTGTTGTTAG
  TGACATTGGT TTCATCATGA TGTTTTTTTT TTTTATTTA                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37691078	NES09204833	PERLEGEN	MM_PANEL2	f	SNP	C			A	C	C		C	C	C
ss147294265	ENSMUSSNP3090810	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A	A			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs28287843					SNP	C	C	A	A	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37691078	NES09204833	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117668521 () rs orientation: forward

Symbol	Name	Function Class
Gm68791	predicted gene, 68791	1519 bp downstream
Rr598215	regulatory region 598215	1504 bp distal
Rr598216	regulatory region 598216	184 bp distal
Rr598217	regulatory region 598217	147 bp proximal
Rr598218	regulatory region 598218	1572 bp proximal