rs28287842 SNP Detail

Summary

• ID
  rs28287842
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:117668972 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTACTTGTGA CCTGGCACCT GTCTAAGCCA AGTTGGTTTG
  GTGCCACCGT GACCACCTCT CCTCCTCTTC TTTCCTTTCT CCTACCATCC TTCTTCCCAG
  R
  ACCAACCCTT GCTGCCTCCA CCCACCAAGG TTGTTGTCTA AAGTCACAAG TCTCTTATTT
  GTCCAGTGAG GAGAGCCAGG GGTGGCTTAA TGCTATTAG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37691077	NES09204819	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	A	A	A	A	G	A	A	G	A	A	A	A
ss147294324	ENSMUSSNP880982	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28287842					SNP	A	A	G	A	A	A	A	A	G	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37691077	NES09204819	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117668972 () rs orientation: forward

Symbol	Name	Function Class
Gm68791	predicted gene, 68791	1068 bp downstream
Rr598215	regulatory region 598215	1955 bp distal
Rr598216	regulatory region 598216	635 bp distal
Rr598217	regulatory region 598217	283 bp distal
Rr598218	regulatory region 598218	1121 bp proximal
Rr598219	regulatory region 598219	1836 bp proximal