rs28287834 SNP Detail

Summary

• ID
  rs28287834
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:117669976 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATAGACCCA GGGTTAATTA AACTGGCATT ACAAGCGTCT
  GGAATCAAAT GGTTGACGTA TAGAAGAGGG TTGAACATTG AACATTATGA ACATTATTTT
  S
  ATTATGAACA TTATTTTGAT ATGAGTTTGG AGTAAGACAA AGTCTTGGTA AAATCAAGCT
  GGATTTTTTT TTTTTAAGAT TTATTTATTG GTAAGTACAC                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37691069	NES09204802	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	C	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28287834					SNP	G	G	G	G	G	G	G	G	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37691069	NES09204802	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117669976 () rs orientation: forward

Symbol	Name	Function Class
Gm68791	predicted gene, 68791	64 bp downstream
Rr598216	regulatory region 598216	1639 bp distal
Rr598217	regulatory region 598217	1287 bp distal
Rr598218	regulatory region 598218	117 bp proximal
Rr598219	regulatory region 598219	832 bp proximal