rs28287830 SNP Detail

Summary

• ID
  rs28287830
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:117670307 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATAA CCCTGATGAA TCAGATGCTA
  Y
  GTCACCCCCA AGATCCCCAC AACAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37691065	NES09204777	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	C	C	T	C	C	C		T	C	T	T		T
ss45575545	mCV22657127	ABI	CRAMUS_MOUSE	f	SNP	T	C						C
ss147294354	ENSMUSSNP1293224	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						C
ss321280499	CHEV_4_117485715	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28287830					SNP	T	C	C	C	C	C	T	C	C	C	C	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37691065	NES09204777	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117670307 () rs orientation: forward

Symbol	Name	Function Class
Gm68791	predicted gene, 68791	within coordinates
Rr598216	regulatory region 598216	1970 bp distal
Rr598217	regulatory region 598217	1618 bp distal
Rr598218	regulatory region 598218	193 bp distal
Rr598219	regulatory region 598219	501 bp proximal