rs28287828 SNP Detail

Summary

• ID
  rs28287828
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:117670559 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAGA TAGTGCCTCA TCTTCGAAGT
  Y
  TGACAGGTAA CCTCCCTCCA GGTTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37691063	NES09204779	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T		C	T	T	T		C	T	C	C		C
ss45601624	mCV22657119	ABI	CRAMUS_MOUSE	f	SNP	C	T				C		T
ss147294364	ENSMUSSNP4796812	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						T
ss321280501	CHEV_4_117485967	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28287828					SNP	C	T	T	T	T	C	C	T	T	T	T	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37691063	NES09204779	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117670559 () rs orientation: forward

Symbol	Name	Function Class
Gm68791	predicted gene, 68791	within coordinates
Rr598217	regulatory region 598217	1870 bp distal
Rr598218	regulatory region 598218	445 bp distal
Rr598219	regulatory region 598219	249 bp proximal
Rr598220	regulatory region 598220	1825 bp proximal