rs28287826 SNP Detail

Summary

• ID
  rs28287826
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:117670766 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAACCTCCC TCCAGGTTTC
  TACAACTAAA AATGTGTCCA GTTACAGGCA AACATCCATG GGGCAGTGCT CAAACTGCCC
  CCCGTTAAAA CTGTCTGCAG TTCCCCAAAT TCCTTTTGAA TGGCTATTAT TGCATCATTG
  GAATAATCTT GTATTAGCTA CAATTTAGAA CCACCCAATC TGTGTCAAAT ACAAATGAGC
  M
  AGTGTTCGTC AAACACCCAG TCAGTCACAC ACACGAACTG CCGTTTAAAC TCTGTGTTGT
  CTAATACCCA CAGCTCCTGC AAGTCTGTGT CTCCATGTCC TGTCGCCAAA CACAGTCTTG
  TCCTGGAGAC TCATGTGACT CATTACCCAG TGCCTTCCAT CATCACCAAC AGCTTTGAAG
  GCAGAGGCCC AGGACTGTCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37691061	NES09204781	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28287826					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37691061	NES09204781	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117670766 () rs orientation: forward

Symbol	Name	Function Class
Gm68791	predicted gene, 68791	within coordinates
Rr598218	regulatory region 598218	652 bp distal
Rr598219	regulatory region 598219	42 bp proximal
Rr598220	regulatory region 598220	1618 bp proximal