rs28287821 SNP Detail

Summary

• ID
  rs28287821
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:117671301 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGTTGCTG GAGACCCACC
  AAGGCTGCTA AGTCCTGTTT GTGCCCTCAT ATCCCATCCC CCTGCCTGTG GATTAGATCT
  GGGGATGGGG AAACTAGATT GGGAGGGTAA GGAGCTTAGA CCCAACGTGA CAGCTAATCA
  CCCACACAAG GCCTCTGTCT AGGTCACCAA GCCCTGAGCA TCCCCACCCC CACCCATGCA
  S
  TAAGGCACAA CAGCGAGCCG AGGAAGGAGT CTAGACTCAC CCTAATTCTT GTCCCCAAGT
  GAGGAAGATA AGAAATGCCC ACAGACATTG AGAGTGTCAG CAGGGGTTCT GAGGGTGCAG
  GGACAGAGAG CTTGAGTCTT CTACTAGACT GTTGGAAGAA AGGTCAGATT ACCACCAGAA
  ACATGTTCTT CTCTAACTTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37691056	NES09204786	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28287821					SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37691056	NES09204786	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117671301 () rs orientation: forward

Symbol	Name	Function Class
Gm68791	predicted gene, 68791	within coordinates
Rr598218	regulatory region 598218	1187 bp distal
Rr598219	regulatory region 598219	200 bp distal
Rr598220	regulatory region 598220	1083 bp proximal