rs28286846 SNP Detail

Summary

• ID
  rs28286846
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:113880701 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGTCTACC CAGGGGCTGT
  GAACACAGCA TATCACATAT CTTAAATAAG GAGAAGAGCT AACTCAACGG GTTATTGGAT
  CTCTTACAGT AAATGTTCCT GAAATTAGCC TCAGGGAATT ATTGCTACCC TTTTCTCCCA
  GCATAGATAC CTTGCTAGAG AGAGTCAGGG AGGGGACCTT CCCTGTGTCA GGTGAGGATT
  Y
  GGGTTCACAG CAAAGTCAGT GAGTTGAGAA TATACGTAAT CAGTGACCGT CCCCTAGCCC
  AAACACACCT GTGGTTCTTC CAGAAGCATA CAGAGACAGC ACTGCCTGGA TGGCGACATA
  CATGGCAGGC ACATTGAAGG TCTCAAACAT GATCTGGGTC ATCTTCTCAC GGTTGGCCTT
  GGGGTTCAGC GGGGCTTCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37667283	NES09035315	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28286846					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37667283	NES09035315	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113880701 () rs orientation: forward

Symbol	Name	Function Class
Actc1	actin, alpha, cardiac muscle 1	Intron
Tssr602	transcription start site region 602	257 bp downstream
Tssr19435	transcription start site region 19435	1042 bp downstream
Tssr19436	transcription start site region 19436	638 bp downstream
Tssr19437	transcription start site region 19437	65 bp upstream
Tssr19438	transcription start site region 19438	148 bp upstream
Tssr19439	transcription start site region 19439	213 bp upstream
Tssr25668	transcription start site region 25668	1979 bp upstream
Tssr25669	transcription start site region 25669	1916 bp upstream
Tssr25670	transcription start site region 25670	978 bp upstream
Tssr25671	transcription start site region 25671	915 bp upstream
Tssr25672	transcription start site region 25672	898 bp upstream
Tssr25673	transcription start site region 25673	867 bp upstream
Tssr25674	transcription start site region 25674	621 bp upstream
Tssr25675	transcription start site region 25675	589 bp upstream
Tssr25676	transcription start site region 25676	566 bp upstream
Tssr25677	transcription start site region 25677	541 bp upstream
Tssr25678	transcription start site region 25678	116 bp downstream
Tssr25679	transcription start site region 25679	125 bp downstream
Tssr25680	transcription start site region 25680	138 bp downstream
Tssr25681	transcription start site region 25681	185 bp downstream
Tssr25682	transcription start site region 25682	267 bp downstream
Tssr25683	transcription start site region 25683	274 bp downstream
Tssr25684	transcription start site region 25684	365 bp downstream
Tssr25685	transcription start site region 25685	735 bp downstream
Tssr25686	transcription start site region 25686	1078 bp downstream
Tssr25687	transcription start site region 25687	1709 bp downstream
Tssr25688	transcription start site region 25688	1773 bp downstream
Tssr25689	transcription start site region 25689	1839 bp downstream
Tssr25690	transcription start site region 25690	1857 bp downstream
Tssr25691	transcription start site region 25691	1979 bp downstream