rs28283242 SNP Detail

Summary

• ID
  rs28283242
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153065471 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCAC ACACCCAGAT ATGCCAGCCT
  R
  CTATAATCTC TATGGTAGTA GGAGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss37560276	NES08917375	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	A	A		A	A	G	G	A
ss45279429	mCV23159829	ABI	CRAMUS_MOUSE	f	SNP		A	G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs28283242					SNP	A	A	G	A	A	A	G	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37560276	NES08917375	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153065471 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12481	CpG island 12481	1439 bp proximal
Rr567581	regulatory region 567581	1538 bp distal
Rr567582	regulatory region 567582	1171 bp distal
Rr567583	regulatory region 567583	1880 bp proximal
Tspyl3	TSPY-like 3	mRNA-UTR
Tssr26887	transcription start site region 26887	1482 bp downstream
Tssr26888	transcription start site region 26888	1826 bp downstream
Tssr26889	transcription start site region 26889	1845 bp downstream