rs28283231 SNP Detail

Summary

• ID
  rs28283231
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153067739 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTTGTCAGG ATGTATTATC CTGGCATAGG CAGAGGGCTT
  ACCAGATTCA AACTGGGAAC TAAAGATAAA CGTAACTGTC AGGCAATGAA GCTGCTGGGA
  W
  AGCCCTAGAA AGATGAGAGG CCAGGAACAA TCTAAAGTTG CTCCATTGTA TTGACCTGTG
  AACATTTATG GAGTGCTTTC ATGGTTGCTA ATTGATATAG                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37560265	NES08917386	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28283231					SNP	A	A	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37560265	NES08917386	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153067739 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12481	CpG island 12481	379 bp distal
Plagl2	pleiomorphic adenoma gene-like 2	1950 bp downstream
Rr567583	regulatory region 567583	within coordinates
Tspyl3	TSPY-like 3	378 bp upstream
Tssr26887	transcription start site region 26887	767 bp upstream
Tssr26888	transcription start site region 26888	425 bp upstream
Tssr26889	transcription start site region 26889	377 bp upstream