rs28283224 SNP Detail

Summary

• ID
  rs28283224
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153069563 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCAGTGCTTA AAGGCTGTTT GATCTGGGTT TTCTGACTCT
  CACACCCAAT ATGAATTGGC ACAATGAAGC CACTTACCTC AAAGACATTC AGTCAAGACC
  Y
  ACTGTCTGCC ATACCCTCAC CGGTATCACT TTGGATGCTC AAGATGCCTA CAGATTGCCA
  TTCTTCACAA TTTCTGGCTC ACTGCAACCC TCCCCAAAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37560258	NES08917227	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	T	C	T		C		T	T	C	C	T	C	T
ss45266885	mCV23160178	ABI	CRAMUS_MOUSE	f	SNP		C					T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28283224					SNP	T	C	T	T	C	T	T	C	C	T	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37560258	NES08917227	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153069563 () rs orientation: forward

Symbol	Name	Function Class
Plagl2	pleiomorphic adenoma gene-like 2	126 bp downstream
Rr567583	regulatory region 567583	1712 bp distal
Rr567584	regulatory region 567584	337 bp proximal
Rr567585	regulatory region 567585	932 bp proximal