rs28281439 SNP Detail

Summary

• ID
  rs28281439
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:163320750 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACAGGCAA ATTAGAAGTT
  CAAAGTCAGC TGATCACCCT AGGCTATATG AGACCCTGTC TCAAAACCTT CCCCTTTTGA
  CAACACGATT TACAAATGAC GAATCTATCC TGGATTACCA CCCCCCACAC CCCACACCCC
  ACACCCCCGT GAGGTCAGGG CCCTCAGATT ACTCATTTCC CAAAAGCTGG TCCCCTGAAA
  Y
  GTGTGCCTTC AGCAAGAAGG CCGCCGAGGG ACATTTCTGA TTCAAAGCAC ACCTGCCTTG
  AACAGGGCTT GGTGAGGATA ACAGTGATTC CAGCCCTCGG AGCAGAAGCA GGAGGAGCAT
  CCAAAGTTCA CAGCCATCCT GGGTTACACA GAGTTCCAAG CCAGAGTTGC TCCGGAAGTG
  AGGCCTTCTC TCAAAACCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37521302	NES08883544	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28281439					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37521302	NES08883544	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163320750 () rs orientation: forward

Symbol	Name	Function Class
Rr569389	regulatory region 569389	1684 bp proximal
Rr569390	regulatory region 569390	1780 bp proximal