rs28281435 SNP Detail

Summary

• ID
  rs28281435
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:163322242 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGGGTAGAA AAGAAATAAC
  CTCAAATAAC AGCTACAGAA TAATTATGTC TTTCATCTCA AGGAATTCCC ACCATTAGGA
  ATGGCTGTGG ATGCTGCTCT GCGGTCCCTA GAGTCTGGAA GATGCTGAGA TGAAACATTG
  GGGTTTGGCG AGGTCAGCTT AGGCCCTGGA AGAGAGGGAA GGGCATGGCC ATCGGTCTGC
  Y
  AGAGGAGCAG TGGGCAACGG TCATTCCCGG AAGAGTGACC AGCCGTGCCC TTTTGTTGGC
  TGGCGCCGAG CGCGAGAGAC AGCCAAGTGT ACTCTCCCAG GAGGAGGCTC TCCTTGTCCA
  CAGTTGCTGG CCAAGCAAGA TGAGCACTCA CTCCTAGCAC CAATTCCTTC CTTCTGGAAC
  TCTTTCTGCA AAGTCTCCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37521298	NES08883508	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T		T	T	T		C
ss320603404	CHEV_2_163306058	CHEVERUD	SCREENING_POP	f	SNP									T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs28281435					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37521298	NES08883508	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163322242 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12636	CpG island 12636	1301 bp proximal
Rr569389	regulatory region 569389	192 bp proximal
Rr569390	regulatory region 569390	288 bp proximal
Rr569391	regulatory region 569391	520 bp proximal
Rr569392	regulatory region 569392	1188 bp proximal
Rr569393	regulatory region 569393	1372 bp proximal