rs28281434 SNP Detail

Summary

• ID
  rs28281434
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:163322286 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGTCTTTC ATCTCAAGGA
  ATTCCCACCA TTAGGAATGG CTGTGGATGC TGCTCTGCGG TCCCTAGAGT CTGGAAGATG
  CTGAGATGAA ACATTGGGGT TTGGCGAGGT CAGCTTAGGC CCTGGAAGAG AGGGAAGGGC
  ATGGCCATCG GTCTGCTAGA GGAGCAGTGG GCAACGGTCA TTCCCGGAAG AGTGACCAGC
  Y
  GTGCCCTTTT GTTGGCTGGC GCCGAGCGCG AGAGACAGCC AAGTGTACTC TCCCAGGAGG
  AGGCTCTCCT TGTCCACAGT TGCTGGCCAA GCAAGATGAG CACTCACTCC TAGCACCAAT
  TCCTTCCTTC TGGAACTCTT TCTGCAAAGT CTCCCCAATG AATCACCCCC TGGCCACGAC
  TCTTTCTGAC CCAAGGGAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37521297	NES08883509	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C		C	C	C	C		T
ss320603405	CHEV_2_163306102	CHEVERUD	SCREENING_POP	f	SNP										C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28281434					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37521297	NES08883509	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163322286 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12636	CpG island 12636	1257 bp proximal
Rr569389	regulatory region 569389	148 bp proximal
Rr569390	regulatory region 569390	244 bp proximal
Rr569391	regulatory region 569391	476 bp proximal
Rr569392	regulatory region 569392	1144 bp proximal
Rr569393	regulatory region 569393	1328 bp proximal