rs28281429 SNP Detail

Summary

• ID
  rs28281429
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:163322664 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTCTTTCT GACCCAAGGG
  AATAGTCAGC CACTGCCTGG AGCGTGGCGC CTGAGTAAAG CTGGTGGTGC CCGCTAGAGG
  GCAGATCTCT GGCCTTCCTA GCTAGAAAGC TGCGCATTCT GTCTGTGCCT CCAACACACA
  CAAACTTAGG GATCGGGACC ACAGGGCAGG CGCTAAGTGT AGGACCCATC TTTGCCCATC
  R
  GCAGGATGCA GGGAGAAGAG GAAGGGTATT GTGCAGGATC CTCACTACCC CCAAGCGGCT
  GGCTTTGTGG ACTACCTCCC AACCCCAACC TCCTAGGGAG ATGCCCCCTG CAGACCTTAG
  ACAGTCATTC AGGCAGCCAA GGGCCCCGGC CTAGGAGGAG GAGCTAGCCT GGCCTGGAAG
  AGGTTGGTAA AGATGAGAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37521292	NES08883514	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	G	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28281429					SNP	A	A	A	A	A	A	G	A	A	G	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37521292	NES08883514	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163322664 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12636	CpG island 12636	879 bp proximal
Rr569389	regulatory region 569389	within coordinates
Rr569390	regulatory region 569390	113 bp distal
Rr569391	regulatory region 569391	98 bp proximal
Rr569392	regulatory region 569392	766 bp proximal
Rr569393	regulatory region 569393	950 bp proximal