rs28281271 SNP Detail

Summary

• ID
  rs28281271
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:163379690 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTCCTGAC CTTCCCAGAT
  CTTTGCCCGC TCACCCTGAG GCCAGCAGAG AGTTCTAGAC AGTCTCCACA GGGCTGGAGG
  GCACAGAGCC TGGACTATGC CACCCCAGGG GACAATTAGT CTCTGGGTCC CTGGTTTGGC
  ACCTTGCTCA CCTTTTAGCC TCTCTGGGGA TTTCAGACCC CAAATGCCCT GGCAATCCAG
  Y
  AACCAGGAGG GAAATTTAAA CCCCAGGGGC TGGGGATGCA GCTGGTAGAA CACTTGCTTG
  CTTGCCTACC GTGGGTGAAG CTCTGTGTTC TTTCTGTATT CAGCACTGAA TAAAGCACAC
  CCGACGGTGC ACACCTGTCA TCCTAGTATT TAGAAAGCAC AGTCAGGAGG ACCAGAAGTT
  CAAGGTCACT CCCACTAGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ
ss37521125	NES08881757	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ
rs28281271					SNP	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37521125	NES08881757	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163379690 () rs orientation: forward

Symbol	Name	Function Class
Hnf4a	hepatic nuclear factor 4, alpha	Intron
Hnf4aos	hepatic nuclear factor 4 alpha, opposite strand	within coordinates
Rr569403	regulatory region 569403	1751 bp distal
Rr569404	regulatory region 569404	1477 bp proximal