rs28281270 SNP Detail

Summary

• ID
  rs28281270
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:163380039 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAGAAAGC ACAGTCAGGA
  GGACCAGAAG TTCAAGGTCA CTCCCACTAG TTAGCGAGTT TAAGGCCAGC CTAAGCTACA
  TATACAAAAC CCTACCGAAA AATAAAAATC TGAGACTTGA CTCCCTGGGA AACCGAGGCT
  CCCTGGCTGA GCCGGCTCTT CCTTAGCCAA GGCTTGCCCC AAAGGTGTCA GATAGCCTAC
  Y
  GACCACCACA GAAAATGAGA AAAGCAAAGT TCAGGACAGC GAGGAGGCTG CTTGACAACA
  CAGGGGTACA CAGGTCATGG ACATACATGC AAGGCTCCTG TAACGCTTGG AAGACAAGAA
  AAACTAAGAA ATGGCCCCAA ATGGTGCAGA AGCTGGGAGC AGTGATGGAC AGAGTCAGGG
  GAAGCAAGTC TCAACAGGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
ss37521124	NES08881710	PERLEGEN	MM_PANEL2	f	SNP	T	C		T	T	T
ss320603587	CHEV_2_163363855	CHEVERUD	SCREENING_POP	f	SNP			T				C
SNP Consensus Information
SNP					Consensus Type	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
rs28281270					SNP	T	C	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37521124	NES08881710	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163380039 () rs orientation: forward

Symbol	Name	Function Class
Hnf4a	hepatic nuclear factor 4, alpha	Intron
Hnf4aos	hepatic nuclear factor 4 alpha, opposite strand	within coordinates
Rr569404	regulatory region 569404	1128 bp proximal