rs28281266 SNP Detail

Summary

• ID
  rs28281266
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:163380469 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATGCAGCA AGGACATCAG
  ATGAAAGGCT TAAGCAAATG AGGTAAAATA GTAAACAAGA ATAATCATAA CTACACACAC
  TGCCATAGCG ACAGGTGTGC AGAGAAGATT ACAATGCATG TCCTAGGAAT TAGTTCCAGG
  TCATTTCATC CTTGACCTGG AAGCCAATAT GCTGTTGCCA ATAATAACAG CAATAGCCAT
  Y
  GGTGCCTGGA ATTAGAGCTG TCCACAAACT GGAGATGGAG CCAGGTGTGG TGCAAACATC
  ACCCATGAGT CAGCATTCTG ACTTGGAGAG GAAGTTATCA CCAACCCACC TAACAGATGG
  GGAAACTGAG CCTCAGCCAA GGTTTGACTT GTACACAGTC AAATCTGGAC CCATATTAAC
  ATATTTCCAG CCTTCCCTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
ss37521120	NES08881717	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C		T	T	T
ss320603593	CHEV_2_163364285	CHEVERUD	SCREENING_POP	f	SNP					T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
rs28281266					SNP	T	T	T	C	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37521120	NES08881717	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163380469 () rs orientation: forward

Symbol	Name	Function Class
Hnf4a	hepatic nuclear factor 4, alpha	Intron
Hnf4aos	hepatic nuclear factor 4 alpha, opposite strand	within coordinates
Rr569404	regulatory region 569404	698 bp proximal
Rr569405	regulatory region 569405	1679 bp proximal