rs28281265 SNP Detail

Summary

• ID
  rs28281265
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:163380483 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCAGATGA AAGGCTTAAG
  CAAATGAGGT AAAATAGTAA ACAAGAATAA TCATAACTAC ACACACTGCC ATAGCGACAG
  GTGTGCAGAG AAGATTACAA TGCATGTCCT AGGAATTAGT TCCAGGTCAT TTCATCCTTG
  ACCTGGAAGC CAATATGCTG TTGCCAATAA TAACAGCAAT AGCCATTGGT GCCTGGAATT
  R
  GAGCTGTCCA CAAACTGGAG ATGGAGCCAG GTGTGGTGCA AACATCACCC ATGAGTCAGC
  ATTCTGACTT GGAGAGGAAG TTATCACCAA CCCACCTAAC AGATGGGGAA ACTGAGCCTC
  AGCCAAGGTT TGACTTGTAC ACAGTCAAAT CTGGACCCAT ATTAACATAT TTCCAGCCTT
  CCCTGACCCA GCAGAGGTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J
ss37521119	NES08881718	PERLEGEN	MM_PANEL2	f	SNP	A	G		A	A
ss320603594	CHEV_2_163364299	CHEVERUD	SCREENING_POP	f	SNP			A			G
SNP Consensus Information
SNP					Consensus Type	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J
rs28281265					SNP	A	G	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37521119	NES08881718	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163380483 () rs orientation: forward

Symbol	Name	Function Class
Hnf4a	hepatic nuclear factor 4, alpha	Intron
Hnf4aos	hepatic nuclear factor 4 alpha, opposite strand	within coordinates
Rr569404	regulatory region 569404	684 bp proximal
Rr569405	regulatory region 569405	1665 bp proximal