rs28281264 SNP Detail

Summary

• ID
  rs28281264
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:163381840 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCGCCCAC GGGACCCAAA
  TCCTGGCTTC TACCCTGATC GTTCCCCAGA CCATCCGCTC ACCAAACCTC CTAAGTTTTT
  CCCGTCAGAA CCTCCCACAA TACACTGCTG TCTGTCCAGA GCTGTTTCCA TGACCCTGTG
  CTGCCAGTTT CTCTTGAGCA TTTGCTGTGT TGGGAAAGTT TTGAAAGGAT GGGGTAACCT
  Y
  GGGACCAGGA ACACAAGTTC TGGAGTTAGG TTGGATTTGA GCCGGACAAC TTATTTCCTA
  TCAACTGTGT GAGCTTGGGT GAAGAACTCA ACCTCTCTGG GCCAGCTGTC TTAACAAACC
  GCTCATGAAA ACGCCCAGCA TCAGAGCAGC GTGAGAATTC AGGAGCGAAG CTCCTGACAC
  AGATGTCCAC GCCATTCATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss37521118	NES08881660	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs28281264					SNP	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37521118	NES08881660	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163381840 () rs orientation: forward

Symbol	Name	Function Class
Hnf4a	hepatic nuclear factor 4, alpha	Intron
Hnf4aos	hepatic nuclear factor 4 alpha, opposite strand	within coordinates
Rr569404	regulatory region 569404	within coordinates
Rr569405	regulatory region 569405	308 bp proximal
Rr569406	regulatory region 569406	872 bp proximal
Rr569407	regulatory region 569407	1740 bp proximal
Tssr27298	transcription start site region 27298	1795 bp downstream