rs28281263 SNP Detail

Summary

• ID
  rs28281263
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:163382201 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAGCGAAG CTCCTGACAC
  AGATGTCCAC GCCATTCATG TCTCTGACGC CATTCGTCCT TGTGGGACAA TTAGAACATA
  GGCATTTTCT CAACTTACAG GGAAGAAACT GAAGCTGAAG GGTCCAGACA GTCTGGGAAG
  GGCTCTGGCT TCTGTGTGTC TCTAAGGGCT GGATGCTTCC AGAGGTAGGA CATAGCCAAG
  R
  TTAGGAGGTG CCCCTGCCTC ACATTCCTGC TGCTGGGACT ACTCAGAGAC CTACAGGACA
  CAGATGCCAT CCCCTAACTT GGGCCTCTGG TGGCTCTCAG AGATCTCAGA GAAAAAGACC
  TGTCATCTCT GTCCCAGGAG AGCCAGACTA TCTATCTAGT ATAGCCTGTT CTTGGACAGG
  CCGCATCCCC ACTTCCGCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
ss37521117	NES08881645	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G		A	A	A
ss320603602	CHEV_2_163366017	CHEVERUD	SCREENING_POP	f	SNP					A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
rs28281263					SNP	A	A	A	G	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37521117	NES08881645	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163382201 () rs orientation: forward

Symbol	Name	Function Class
Hnf4a	hepatic nuclear factor 4, alpha	Intron
Hnf4aos	hepatic nuclear factor 4 alpha, opposite strand	within coordinates
Rr569404	regulatory region 569404	333 bp distal
Rr569405	regulatory region 569405	within coordinates
Rr569406	regulatory region 569406	511 bp proximal
Rr569407	regulatory region 569407	1379 bp proximal
Tssr27298	transcription start site region 27298	1434 bp downstream