rs28279710 SNP Detail

Summary

• ID
  rs28279710
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164118232 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGTC CCTGCCACTT CTCTGATTCA
  S
  GAACAGGGAC TTCTCTTTGT ACTCA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss37518044	NES08870013	PERLEGEN	MM_PANEL2	f	SNP	G			G	C	C	C	C	C		G	C	C		G
ss148221296	ENSMUSSNP4008126	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	C					C
ss320605186	CHEV_2_164102048	CHEVERUD	SCREENING_POP	f	SNP										G				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs28279710					SNP	G	G	C	G	C	C	C	C	C	G	G	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37518044	NES08870013	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164118232 () rs orientation: forward

Symbol	Name	Function Class
Svs4	seminal vesicle secretory protein 4	Intron
Tssr21549	transcription start site region 21549	354 bp downstream
Tssr21550	transcription start site region 21550	242 bp downstream
Tssr21551	transcription start site region 21551	790 bp upstream
Tssr21552	transcription start site region 21552	834 bp upstream
Tssr27409	transcription start site region 27409	316 bp upstream
Tssr27410	transcription start site region 27410	286 bp upstream
Tssr27411	transcription start site region 27411	261 bp upstream
Tssr27412	transcription start site region 27412	234 bp upstream
Tssr27413	transcription start site region 27413	219 bp upstream
Tssr27414	transcription start site region 27414	207 bp upstream
Tssr27415	transcription start site region 27415	188 bp upstream
Tssr27416	transcription start site region 27416	765 bp downstream
Tssr27417	transcription start site region 27417	774 bp downstream
Tssr27418	transcription start site region 27418	845 bp downstream
Tssr27419	transcription start site region 27419	855 bp downstream
Tssr27420	transcription start site region 27420	875 bp downstream
Tssr27421	transcription start site region 27421	899 bp downstream
Tssr27422	transcription start site region 27422	917 bp downstream
Tssr27423	transcription start site region 27423	955 bp downstream
Tssr27424	transcription start site region 27424	985 bp downstream
Tssr27425	transcription start site region 27425	1006 bp downstream
Tssr27426	transcription start site region 27426	1264 bp downstream
Tssr27427	transcription start site region 27427	1942 bp downstream
Tssr27428	transcription start site region 27428	1988 bp downstream