rs28279076 SNP Detail

Summary

• ID
  rs28279076
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:163138878 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGATATTAT CCCACTCTAC
  AGGGAAGGCA ACTGAGGGTT TGGGAAGCCA CCTGGGGAGG CATCCAAGGT GTTGGTGGCT
  TGGGAAGCCC TAAAGCATGT GATGGGAGCA GGGGCCATGG GGATCAAGGA GAGAGAACGC
  AGGTTCTGAA GGACTGCAGG TAACCTGTTG CCTGGACGAG CATCATGTAA GCTAGCAACA
  Y
  CTGGCCACTG ACCGTTGGAT GCTGGGAGCC AGTGATGTGC TTCATCCACT GAGCCTTGCC
  CCACAGGCCA GCTCTCCCCA GAGAGCCTTT GCTACTTAAT TTTTGGCCAA TTAGGCAGTA
  GGAATCACCC CAGAACACGG AGTCCTGCCT GTGCCTGGGA TCCACTCTGT GTCTTCAGGA
  GACTTTTTAC CCTCCACAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37522010	NES08865852	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs28279076					SNP	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37522010	NES08865852	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163138878 () rs orientation: forward

Symbol	Name	Function Class
Rr569324	regulatory region 569324	31 bp proximal
Rr569325	regulatory region 569325	1422 bp proximal
Tox2	TOX high mobility group box family member 2	Intron